Somebody didn't know what they were doing when they had a start up problem at some stage. I bet that both operating systems work fine too. What you can do is correct the fault in boot.ini or delete the non working partition and add the space to the working partition. Both of those methods may be a little complicated for the faint hearted.
If your happy with the setup and just want the non working entry removed you can do that by editing x:\boot.ini (file is a system hidden file). Simply delete the line that isn't working. Make sure that the default setting matches the working line too. If you think you might stuff that up then backup the file first.
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